A
Amy Lee
Hello,
I'm a newbie in Perl and do some work in Bioinformatics. I write a tiny
script to show the sequences. However, I have a problem while I'm going to
further process.
My output looks like this.
tcttttgaggtggtcagcatttcctccgtggactccctctttgggcaaccttgtctgtcc
gatgcagcggtaatgatggcccgagttatgttggggaacggttttgaacccgggatgggt
ttagaaaaaaacaacggcggcataactagc
And I hope I can save the whole protein sequences with their
tags(>blahblah) into a file, like "protein" and save DNA sequences into
"dna" file.
So from that, "protein" is
PVQPKAPTQREAPQVPTPNTTRPAGNSNTTRNFPPRPLPEFTPLPMTYEDLLPSLIANHL
AVVTPGRVLEPPFPKWYDPNATCKYHGGVPGHSVEKCLALKYKVQHLMDAGWLTFQEDRP
NVRTNPLANHGGGAVNAVESD
"dna" is
tcttttgaggtggtcagcatttcctccgtggactccctctttgggcaaccttgtctgtcc
gatgcagcggtaatgatggcccgagttatgttggggaacggttttgaacccgggatgggt
ttagaaaaaaacaacggcggcataactagc
Because of lacking of Perl knowledge, could you show me some tips?
Thank you very much~
Regards,
Amy Lee
I'm a newbie in Perl and do some work in Bioinformatics. I write a tiny
script to show the sequences. However, I have a problem while I'm going to
further process.
My output looks like this.
tggaagccgcagaagaatcgttagaaactgctttccagxxx IGRRQWASLVTPMAKFDPEIVLEFYANAWPTEEGVRDMRSWVRGQWIPFDADA
IGQLLGYPLVLEEGQECEYGQRRNRSDGFDEEA
gaggccatcaagggatggtcgtttctccgggagcaacgcgtccagctcagggacgacgag
tatactgatttccaggaggaaatagggcgccggcagtgggcatcactggttactcccatg
gccaagttcgatccggaaatagtccttgagttttatgccaatgcttggccaacagaggag
EGDAHAVSSTPAWVKPQQTPHGTHQYAQHHPSFSAHAGNASSST
PVQPKAPTQREAPQVPTPNTTRPAGNSNTTRNFPPRPLPEFTPLPMTYEDLLPSLIANHL
AVVTPGRVLEPPFPKWYDPNATCKYHGGVPGHSVEKCLALKYKVQHLMDAGWLTFQEDRP
NVRTNPLANHGGGAVNAVESD
qqq
tcttttgaggtggtcagcatttcctccgtggactccctctttgggcaaccttgtctgtcc
gatgcagcggtaatgatggcccgagttatgttggggaacggttttgaacccgggatgggt
ttagaaaaaaacaacggcggcataactagc
And I hope I can save the whole protein sequences with their
tags(>blahblah) into a file, like "protein" and save DNA sequences into
"dna" file.
So from that, "protein" is
EGDAHAVSSTPAWVKPQQTPHGTHQYAQHHPSFSAHAGNASSSTxxx IGRRQWASLVTPMAKFDPEIVLEFYANAWPTEEGVRDMRSWVRGQWIPFDADA
IGQLLGYPLVLEEGQECEYGQRRNRSDGFDEEA
zzz
PVQPKAPTQREAPQVPTPNTTRPAGNSNTTRNFPPRPLPEFTPLPMTYEDLLPSLIANHL
AVVTPGRVLEPPFPKWYDPNATCKYHGGVPGHSVEKCLALKYKVQHLMDAGWLTFQEDRP
NVRTNPLANHGGGAVNAVESD
"dna" is
tggaagccgcagaagaatcgttagaaactgctttccagyyy gaggccatcaagggatggtcgtttctccgggagcaacgcgtccagctcagggacgacgag
tatactgatttccaggaggaaatagggcgccggcagtgggcatcactggttactcccatg
gccaagttcgatccggaaatagtccttgagttttatgccaatgcttggccaacagaggag
qqq
tcttttgaggtggtcagcatttcctccgtggactccctctttgggcaaccttgtctgtcc
gatgcagcggtaatgatggcccgagttatgttggggaacggttttgaacccgggatgggt
ttagaaaaaaacaacggcggcataactagc
Because of lacking of Perl knowledge, could you show me some tips?
Thank you very much~
Regards,
Amy Lee