.NET 2.0 app running in IIS 6

[Guest]

I understand that your ASP.NET 2.0 applications should be in a different
application pool than your 1.1 applications.

Say for example you have common user controls that both your 1.1 and 2.0
applications reference through a Virtual Directory.

The commoncontrols project is set up as an application that other
applications have a virtual directory reference too. The commoncontrols
application is a 1.1 application.

So here is the set up

IISWebRoot
---->CommonControls (1.1) (AppPool1)

---->SampleApp1(1.1) (AppPool1)
----------->CommonControls (Virtual Directory)

---->SampleApp2(2.0) (AppPool2)
----------->CommonControls (Virtual Directory)

Will there be any conflicts with this? If I run SampleApp1 and then run
SampleApp2 does CommonControls now have an instance running in AppPool1 and
AppPool2?

Can someone elaborate on this for me or point me to a website that will
provide me the answer and other details?

Thanks

-Dan