Java library for tree pattern matching

[Ahmed Moustafa]

Hi All,

Is there a Java library for tree pattern matching, specifically
phylogenetic trees? I've googled but could not something like that!

And if there is nothing like that, which algorithm would be recommended
for a Java implementation?

Your help will be appreciated so much!

Ahmed

 

[Tris Orendorff]

Hi All,

Is there a Java library for tree pattern matching, specifically
phylogenetic trees? I've googled but could not something like that!

Treefinder might be what you want, see [http://www.biomedcentral.com/1471-
2148/4/18] for details.

 

[Ahmed Moustafa]

Hi Tris,
Thanks a lot for your help!
TREEFINDER sounds very close! I will go through the paper.
BTW, the link was broken; I am just putting it again:
http://www.biomedcentral.com/1471-2148/4/18
Thanks again!
Ahmed