Hi, I am turning to this community as I start getting desperate on my project... I am trying to detect viruses in my samples. For that, I have extracted RNA, sequenced them and now, the fun but hard part ( for me ): command lines on linux.
I know what to use ( hmmer, checkV, Vir Sorter, BLAST) but I have no idea how to run them or what to do with them. I feel completely lost.
Also, I managed to filter my samples on linux and I need to: select the samples with low reads, classify them in order and make an histogram from it to detect a potential pattern with existing viruses. Do you know the command line on linux ? Many thanks
I know what to use ( hmmer, checkV, Vir Sorter, BLAST) but I have no idea how to run them or what to do with them. I feel completely lost.
Also, I managed to filter my samples on linux and I need to: select the samples with low reads, classify them in order and make an histogram from it to detect a potential pattern with existing viruses. Do you know the command line on linux ? Many thanks